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WormBase Tree Display for CDS: PPA11270

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Name Class

PPA11270SMapS_parentSequencePPA_ChrII
StructureSource_exons (12)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S495-0.24
TREEFAMTREEFAM_IDTF318622
DB_remarkcontains similarity to Pfam domain PF00806 (Pumilio-family RNA binding repeat); contains similarity to Interpro domains IPR001313 (Pumilio RNA-binding repeat), IPR011989 (Armadillo-like helical), IPR016024 (Armadillo-type fold)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00100824
Corresponding_transcriptPPA11270.1
Corresponding_proteinPP63938
Corresponding_oligo_setGPL14372_Probes_17558
GPL14372_Probes_17559
GPL14372_Probes_17560
GPL14372_Probes_17561
Matching_cDNAAW097896Inferred_automaticallytranscript_builder.pl
FG100291Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_17558
GPL14372_Probes_17559
GPL14372_Probes_17560
GPL14372_Probes_17561
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S495-0.24Curator_confirmedWBPerson4055
Methodcurated