WormBase Tree Display for CDS: PPA11304
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PPA11304 | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
Inferred_automatically | make_isoforms.pl | |||||
SMap | S_parent | Sequence | PPA_ChrIII | |||
Structure | Source_exons (11) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S413-1.10 | ||
TREEFAM | TREEFAM_ID | TF105825 | ||||
DB_remark | PPA-MRPL-45 protein; contains similarity to Pfam domain PF04280 (Tim44-like domain); contains similarity to Interpro domains IPR007379 (Tim44-like domain), IPR032710 (NTF2-like domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00100858 | ||||
Corresponding_transcript | PPA11304.1 | |||||
Corresponding_protein | PP75499 | |||||
Corresponding_oligo_set | GPL14372_Probes_47816 | |||||
GPL14372_Probes_47817 | ||||||
GPL14372_Probes_47819 | ||||||
Matching_cDNA | FG103103 | Inferred_automatically | transcript_builder.pl | |||
FG106719 | Inferred_automatically | transcript_builder.pl | ||||
FG104816 | Inferred_automatically | transcript_builder.pl | ||||
FG104454 | Inferred_automatically | transcript_builder.pl | ||||
FG105297 | Inferred_automatically | transcript_builder.pl | ||||
FG103649 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_47816 | |||||
GPL14372_Probes_47817 | ||||||
GPL14372_Probes_47819 | ||||||
RNASeq_FPKM | WBls:0000032 | 7.16587 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 8.46388 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Last_reviewed | 20 Nov 2019 16:41:44 | WBPerson4055 | ||||
Remark | [171116 mh6] renamed from gene-UMM-S413-1.10 | Curator_confirmed | WBPerson4055 | |||
[191120 mh6] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4055 | ||||
From_analysis | RNASeq | |||||
Method | curated |