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WormBase Tree Display for CDS: PPA11304

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Name Class

PPA11304EvidenceCurator_confirmedWBPerson4055
Inferred_automaticallymake_isoforms.pl
SMapS_parentSequencePPA_ChrIII
StructureSource_exons (11)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S413-1.10
TREEFAMTREEFAM_IDTF105825
DB_remarkPPA-MRPL-45 protein; contains similarity to Pfam domain PF04280 (Tim44-like domain); contains similarity to Interpro domains IPR007379 (Tim44-like domain), IPR032710 (NTF2-like domain superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00100858
Corresponding_transcriptPPA11304.1
Corresponding_proteinPP75499
Corresponding_oligo_setGPL14372_Probes_47816
GPL14372_Probes_47817
GPL14372_Probes_47819
Matching_cDNAFG103103Inferred_automaticallytranscript_builder.pl
FG106719Inferred_automaticallytranscript_builder.pl
FG104816Inferred_automaticallytranscript_builder.pl
FG104454Inferred_automaticallytranscript_builder.pl
FG105297Inferred_automaticallytranscript_builder.pl
FG103649Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_47816
GPL14372_Probes_47817
GPL14372_Probes_47819
RNASeq_FPKMWBls:00000327.16587From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001018.46388From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Last_reviewed20 Nov 2019 16:41:44WBPerson4055
Remark[171116 mh6] renamed from gene-UMM-S413-1.10Curator_confirmedWBPerson4055
[191120 mh6] This CDS has been updated based on the RNAseq data.Curator_confirmedWBPerson4055
From_analysisRNASeq
Methodcurated