WormBase Tree Display for CDS: PPA11518
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PPA11518 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 14 | |||
896 | 973 | |||||
1138 | 1195 | |||||
1434 | 1478 | |||||
1791 | 1855 | |||||
2496 | 2553 | |||||
2880 | 2972 | |||||
3651 | 3731 | |||||
4070 | 4159 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2854-24.5 | ||
TREEFAM | TREEFAM_ID | TF315098 | ||||
DB_remark | contains similarity to Pfam domain PF08617 (Kinase binding protein CGI-121); contains similarity to Interpro domains IPR013926 (CGI121/TPRKB), IPR036504 (CGI121/TPRKB superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00101072 | ||||
Corresponding_transcript | PPA11518.1 | |||||
Corresponding_protein | PP31813 | |||||
Corresponding_oligo_set | GPL14372_Probes_4560 | |||||
GPL14372_Probes_4561 | ||||||
GPL14372_Probes_4562 | ||||||
GPL14372_Probes_4563 | ||||||
Microarray_results | GPL14372_Probes_4560 | |||||
GPL14372_Probes_4561 | ||||||
GPL14372_Probes_4562 | ||||||
GPL14372_Probes_4563 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2854-24.5 | Curator_confirmed | WBPerson4055 | |||
Method | curated |