WormBase Tree Display for CDS: PPA11755
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PPA11755 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (31) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S278-3.8 | ||
TREEFAM | TREEFAM_ID | TF105803 | ||||
DB_remark | PPA-VPS-39 protein; contains similarity to Pfam domains PF00780 (CNH domain), PF10366 (Vacuolar sorting protein 39 domain 1), PF10367 (Vacuolar sorting protein 39 domain 2); contains similarity to Interpro domains IPR019452 (Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1), IPR019453 (Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2), IPR032914 (Vam6/VPS39/TRAP1 family), IPR001180 (Citron homology (CNH) domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00101309 | ||||
Corresponding_transcript | PPA11755.1 | |||||
Corresponding_protein | PP63253 | |||||
Corresponding_oligo_set | GPL14372_Probes_73680 | |||||
GPL14372_Probes_73682 | ||||||
Microarray_results | GPL14372_Probes_73680 | |||||
GPL14372_Probes_73682 | ||||||
RNASeq_FPKM | WBls:0000032 | 1.2283 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S278-3.8 | Curator_confirmed | WBPerson4055 | |||
Method | curated |