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WormBase Tree Display for CDS: PPA11755

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Name Class

PPA11755SMapS_parentSequencePPA_ChrI
StructureSource_exons (31)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S278-3.8
TREEFAMTREEFAM_IDTF105803
DB_remarkPPA-VPS-39 protein; contains similarity to Pfam domains PF00780 (CNH domain), PF10366 (Vacuolar sorting protein 39 domain 1), PF10367 (Vacuolar sorting protein 39 domain 2); contains similarity to Interpro domains IPR019452 (Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1), IPR019453 (Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2), IPR032914 (Vam6/VPS39/TRAP1 family), IPR001180 (Citron homology (CNH) domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
Start_not_found1
VisibleGeneWBGene00101309
Corresponding_transcriptPPA11755.1
Corresponding_proteinPP63253
Corresponding_oligo_setGPL14372_Probes_73680
GPL14372_Probes_73682
Microarray_resultsGPL14372_Probes_73680
GPL14372_Probes_73682
RNASeq_FPKMWBls:00000321.2283From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S278-3.8Curator_confirmedWBPerson4055
Methodcurated