WormBase Tree Display for CDS: PPA11772
expand all nodes | collapse all nodes | view schema
| PPA11772 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (11) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S278-3.3 | ||
| TREEFAM | TREEFAM_ID | TF314333 | ||||
| DB_remark | contains similarity to Pfam domains PF00175 (Oxidoreductase NAD-binding domain), PF00970 (Oxidoreductase FAD-binding domain); contains similarity to Interpro domains IPR008333 (Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain), IPR017938 (Riboflavin synthase-like beta-barrel), IPR001433 (Oxidoreductase FAD/NAD(P)-binding), IPR001709 (Flavoprotein pyridine nucleotide cytochrome reductase), IPR039261 (Ferredoxin-NADP reductase (FNR), nucleotide-binding domain), IPR001834 (NADH:cytochrome b5 reductase-like) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00101326 | ||||
| Corresponding_transcript | PPA11772.1 | |||||
| Corresponding_protein | PP65704 | |||||
| Corresponding_oligo_set | GPL14372_Probes_73637 | |||||
| GPL14372_Probes_73638 | ||||||
| GPL14372_Probes_73639 | ||||||
| GPL14372_Probes_73641 | ||||||
| Matching_cDNA | FG094810 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_73637 | |||||
| GPL14372_Probes_73638 | ||||||
| GPL14372_Probes_73639 | ||||||
| GPL14372_Probes_73641 | ||||||
| RNASeq_FPKM | WBls:0000032 | 4.07064 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S278-3.3 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
