WormBase Tree Display for CDS: PPA11778
expand all nodes | collapse all nodes | view schema
PPA11778 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 111 | |||
419 | 465 | |||||
512 | 632 | |||||
681 | 762 | |||||
962 | 1017 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S278-2.58 | ||
TREEFAM | TREEFAM_ID | TF319035 | ||||
DB_remark | PPA-KXD-1 protein; contains similarity to Pfam domain PF10241 (Uncharacterized conserved protein); contains similarity to Interpro domains IPR039843 (KxDL motif-containing protein 1-like), IPR019371 (KxDL domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00101332 | ||||
Corresponding_transcript | PPA11778.1 | |||||
Corresponding_protein | PP72471 | |||||
Corresponding_oligo_set | GPL14372_Probes_73609 | |||||
Microarray_results | GPL14372_Probes_73609 | |||||
RNASeq_FPKM | WBls:0000032 | 75.307 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 17.8029 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S278-2.58 | Curator_confirmed | WBPerson4055 | |||
Method | curated |