WormBase Tree Display for CDS: PPA11844
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| PPA11844 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (53) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S71-2.33 | ||
| TREEFAM | TREEFAM_ID | TF101062 | ||||
| DB_remark | contains similarity to Pfam domains PF00060 (Ligand-gated ion channel), PF02724 (CDC45-like protein), PF10613 (Ligated ion channel L-glutamate- and glycine-binding site); contains similarity to Interpro domains IPR001320 (Ionotropic glutamate receptor, C-terminal), IPR001508 (Ionotropic glutamate receptor, metazoa), IPR019594 (Ionotropic glutamate receptor, L-glutamate and glycine-binding domain), IPR003874 (CDC45 family) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00101398 | ||||
| Corresponding_transcript | PPA11844.1 | |||||
| Corresponding_protein | PP56403 | |||||
| Corresponding_oligo_set | GPL14372_Probes_48970 | |||||
| GPL14372_Probes_48971 | ||||||
| GPL14372_Probes_48973 | ||||||
| GPL14372_Probes_6381 | ||||||
| Matching_cDNA | EB183983 | Inferred_automatically | transcript_builder.pl | |||
| FE933869 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_6381 | |||||
| GPL14372_Probes_48970 | ||||||
| GPL14372_Probes_48971 | ||||||
| GPL14372_Probes_48973 | ||||||
| RNASeq_FPKM | WBls:0000032 | 1.50625 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 2.66815 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S71-2.33 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
