WormBase Tree Display for CDS: PPA11856
expand all nodes | collapse all nodes | view schema
| PPA11856 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (90) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S71-3.18 | ||
| DB_remark | PPA-WARS-1 protein; contains similarity to Pfam domains PF00059 (Lectin C-type domain), PF00579 (tRNA synthetases class I (W and Y)), PF06246 (Isy1-like splicing family), PF13086 (AAA domain), PF13087 (AAA domain), PF16399 (Intron-binding protein aquarius N-terminal); contains similarity to Interpro domains IPR041679 (DNA2/NAM7 helicase-like, C-terminal), IPR036465 (von Willebrand factor A-like domain superfamily), IPR003609 (PAN/Apple domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR016186 (C-type lectin-like/link domain superfamily), IPR001304 (C-type lectin-like), IPR029012 (Helix hairpin bin domain superfamily), IPR002306 (Tryptophan-tRNA ligase), IPR009360 (Pre-mRNA-splicing factor Isy1), IPR002305 (Aminoacyl-tRNA synthetase, class Ic), IPR032174 (RNA helicase aquarius, N-terminal domain), IPR041677 (DNA2/NAM7 helicase, helicase domain), IPR016187 (C-type lectin fold), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR037200 (Pre-mRNA-splicing factor Isy1 superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00101410 | ||||
| Corresponding_transcript | PPA11856.1 | |||||
| Corresponding_protein | PP57778 | |||||
| Corresponding_oligo_set (25) | ||||||
| Matching_cDNA | FE938902 | Inferred_automatically | transcript_builder.pl | |||
| AW114926 | Inferred_automatically | transcript_builder.pl | ||||
| FG099491 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results (25) | ||||||
| RNASeq_FPKM | WBls:0000032 | 5.61599 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 9.72673 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S71-3.18 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
