WormBase Tree Display for CDS: PPA11882b
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| PPA11882b | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrII | |||
| Structure | Source_exons (13) | |||||
| DB_info | DB_remark | PPA-LGC-34 protein; contains similarity to Pfam domain PF02931 (Neurotransmitter-gated ion-channel ligand binding domain); contains similarity to Interpro domains IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR006201 (Neurotransmitter-gated ion-channel) | ||||
| Origin | From_laboratory | HX | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Isoform | Curator_confirmed | WBPerson4055 | ||||
| Visible | Gene | WBGene00101436 | ||||
| Corresponding_transcript | PPA11882b.1 | |||||
| Corresponding_protein | PP75727 | |||||
| Corresponding_oligo_set | GPL14372_Probes_90240 | |||||
| GPL14372_Probes_90241 | ||||||
| GPL14372_Probes_90242 | ||||||
| GPL14372_Probes_90243 | ||||||
| GPL14372_Probes_90244 | ||||||
| Matching_cDNA | BI500362 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_90240 | |||||
| GPL14372_Probes_90241 | ||||||
| GPL14372_Probes_90242 | ||||||
| GPL14372_Probes_90243 | ||||||
| GPL14372_Probes_90244 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0.421666 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0.48318 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 14 Oct 2019 13:43:37 | WBPerson4055 | ||||
| Remark | [191014 mh6] This structure has been created based on the RNASeq data. | Curator_confirmed | WBPerson4055 | |||
| From_analysis | RNASeq | |||||
| Method | curated |
