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WormBase Tree Display for CDS: PPA12336

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Name Class

PPA12336SMapS_parentSequencePPA_ChrI
StructureSource_exons1165
495587
750818
13331470
15411676
22402364
24222583
27822901
29793137
33753488
DB_infoDatabasepristionchus.orgcdsgene-UMS-S2844-44.30
TREEFAMTREEFAM_IDTF101533
DB_remarkcontains similarity to Pfam domains PF01873 (Domain found in IF2B/IF5), PF02020 (eIF4-gamma/eIF5/eIF2-epsilon); contains similarity to Interpro domains IPR016021 (), IPR016189 (Translation initiation factor IF2/IF5, N-terminal), IPR002735 (Translation initiation factor IF2/IF5 domain), IPR016190 (Translation initiation factor IF2/IF5, zinc-binding), IPR003307 (W2 domain), IPR016024 (Armadillo-type fold)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00101890
Corresponding_transcriptPPA12336.1
Corresponding_proteinPP53462
Corresponding_oligo_setGPL14372_Probes_91260
GPL14372_Probes_91261
GPL14372_Probes_91262
GPL14372_Probes_91263
GPL14372_Probes_91264
GPL14372_Probes_91267
Matching_cDNAAW114167Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_91260
GPL14372_Probes_91261
GPL14372_Probes_91262
GPL14372_Probes_91263
GPL14372_Probes_91264
GPL14372_Probes_91267
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010114.1489From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMS-S2844-44.30Curator_confirmedWBPerson4055
Methodcurated