WormBase Tree Display for CDS: PPA12336
expand all nodes | collapse all nodes | view schema
PPA12336 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 165 | |||
495 | 587 | |||||
750 | 818 | |||||
1333 | 1470 | |||||
1541 | 1676 | |||||
2240 | 2364 | |||||
2422 | 2583 | |||||
2782 | 2901 | |||||
2979 | 3137 | |||||
3375 | 3488 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S2844-44.30 | ||
TREEFAM | TREEFAM_ID | TF101533 | ||||
DB_remark | contains similarity to Pfam domains PF01873 (Domain found in IF2B/IF5), PF02020 (eIF4-gamma/eIF5/eIF2-epsilon); contains similarity to Interpro domains IPR016021 (), IPR016189 (Translation initiation factor IF2/IF5, N-terminal), IPR002735 (Translation initiation factor IF2/IF5 domain), IPR016190 (Translation initiation factor IF2/IF5, zinc-binding), IPR003307 (W2 domain), IPR016024 (Armadillo-type fold) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00101890 | ||||
Corresponding_transcript | PPA12336.1 | |||||
Corresponding_protein | PP53462 | |||||
Corresponding_oligo_set | GPL14372_Probes_91260 | |||||
GPL14372_Probes_91261 | ||||||
GPL14372_Probes_91262 | ||||||
GPL14372_Probes_91263 | ||||||
GPL14372_Probes_91264 | ||||||
GPL14372_Probes_91267 | ||||||
Matching_cDNA | AW114167 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_91260 | |||||
GPL14372_Probes_91261 | ||||||
GPL14372_Probes_91262 | ||||||
GPL14372_Probes_91263 | ||||||
GPL14372_Probes_91264 | ||||||
GPL14372_Probes_91267 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 14.1489 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMS-S2844-44.30 | Curator_confirmed | WBPerson4055 | |||
Method | curated |