WormBase Tree Display for CDS: PPA12496
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| PPA12496 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (57) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S71-42.47 | ||
| DB_remark | contains similarity to Pfam domains PF00149 (Calcineurin-like phosphoesterase), PF00387 (Phosphatidylinositol-specific phospholipase C, Y domain), PF00388 (Phosphatidylinositol-specific phospholipase C, X domain), PF17787 (PH domain); contains similarity to Interpro domains IPR029052 (Metallo-dependent phosphatase-like), IPR037862 (PLC-beta, PH domain), IPR000909 (Phosphatidylinositol-specific phospholipase C, X domain), IPR001711 (Phospholipase C, phosphatidylinositol-specific, Y domain), IPR011992 (EF-hand domain pair), IPR001192 (Phosphoinositide phospholipase C family), IPR004843 (Calcineurin-like phosphoesterase domain, ApaH type), IPR017946 (PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily), IPR035892 (C2 domain superfamily), IPR000008 (C2 domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00102050 | ||||
| Corresponding_transcript | PPA12496.1 | |||||
| Corresponding_protein | PP64291 | |||||
| Corresponding_oligo_set (13) | ||||||
| Microarray_results (13) | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0.868125 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S71-42.47 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
