WormBase Tree Display for CDS: PPA12504
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PPA12504 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (19) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-41.32 | ||
TREEFAM | TREEFAM_ID | TF318036 | ||||
DB_remark | PPA-ZTF-7 protein; contains similarity to Pfam domain PF12756 (C2H2 type zinc-finger (2 copies)); contains similarity to Interpro domains IPR036236 (Zinc finger C2H2 superfamily), IPR041661 (ZN622/Rei1/Reh1, zinc finger C2H2-type), IPR013087 (Zinc finger C2H2-type), IPR040048 (Zinc finger protein 277) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00102058 | ||||
Corresponding_transcript | PPA12504.1 | |||||
Corresponding_protein | PP59127 | |||||
Corresponding_oligo_set | GPL14372_Probes_10380 | |||||
GPL14372_Probes_10381 | ||||||
GPL14372_Probes_10382 | ||||||
GPL14372_Probes_10383 | ||||||
GPL14372_Probes_10384 | ||||||
Microarray_results | GPL14372_Probes_10380 | |||||
GPL14372_Probes_10381 | ||||||
GPL14372_Probes_10382 | ||||||
GPL14372_Probes_10383 | ||||||
GPL14372_Probes_10384 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S71-41.32 | Curator_confirmed | WBPerson4055 | |||
Method | curated |