WormBase Tree Display for CDS: PPA12508
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PPA12508 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 148 | |||
228 | 323 | |||||
557 | 652 | |||||
1006 | 1084 | |||||
1291 | 1384 | |||||
1671 | 1781 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-41.37 | ||
DB_remark | PPA-HOT-1 protein; contains similarity to Pfam domain PF06579 (Caenorhabditis elegans ly-6-related protein); contains similarity to Interpro domain IPR010558 (Caenorhabditis elegans ly-6-related) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00102062 | ||||
Corresponding_transcript | PPA12508.1 | |||||
Corresponding_protein | PP61582 | |||||
Corresponding_oligo_set | GPL14372_Probes_10392 | |||||
GPL14372_Probes_10393 | ||||||
GPL14372_Probes_10395 | ||||||
GPL14372_Probes_10396 | ||||||
Microarray_results | GPL14372_Probes_10392 | |||||
GPL14372_Probes_10393 | ||||||
GPL14372_Probes_10395 | ||||||
GPL14372_Probes_10396 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S71-41.37 | Curator_confirmed | WBPerson4055 | |||
Method | curated |