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WormBase Tree Display for CDS: PPA12549

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Name Class

PPA12549SMapS_parentSequencePPA_ChrI
StructureSource_exons1144
394467
671740
12631287
18591986
21732299
23742420
25592630
32253309
36243679
DB_infoDatabasepristionchus.orgcdsgene-UMM-S71-39.8
DB_remarkPPA-PQN-70 protein; contains similarity to Saccharomyces cerevisiae Ski complex component and putative RNA helicase; mediates 3'-5' RNA degradation by the cytoplasmic exosome; null mutants have superkiller phenotype of increased viral dsRNAs and are synthetic lethal with mutations in 5'-3' mRNA decay; mutations in the human ortholog, SKIV2L, causes Syndromic diarrhea/Trichohepatoenteric (SD/THE) syndrome; SGD:YLR398C
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00102103
Corresponding_transcriptPPA12549.1
Corresponding_proteinPP59564
Corresponding_oligo_setGPL14372_Probes_10544
GPL14372_Probes_10545
GPL14372_Probes_10546
GPL14372_Probes_10547
Microarray_resultsGPL14372_Probes_10544
GPL14372_Probes_10545
GPL14372_Probes_10546
GPL14372_Probes_10547
RNASeq_FPKMWBls:000003215.4923From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S71-39.8Curator_confirmedWBPerson4055
Methodcurated