WormBase Tree Display for CDS: PPA12549
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PPA12549 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 144 | |||
394 | 467 | |||||
671 | 740 | |||||
1263 | 1287 | |||||
1859 | 1986 | |||||
2173 | 2299 | |||||
2374 | 2420 | |||||
2559 | 2630 | |||||
3225 | 3309 | |||||
3624 | 3679 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-39.8 | ||
DB_remark | PPA-PQN-70 protein; contains similarity to Saccharomyces cerevisiae Ski complex component and putative RNA helicase; mediates 3'-5' RNA degradation by the cytoplasmic exosome; null mutants have superkiller phenotype of increased viral dsRNAs and are synthetic lethal with mutations in 5'-3' mRNA decay; mutations in the human ortholog, SKIV2L, causes Syndromic diarrhea/Trichohepatoenteric (SD/THE) syndrome; SGD:YLR398C | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00102103 | ||||
Corresponding_transcript | PPA12549.1 | |||||
Corresponding_protein | PP59564 | |||||
Corresponding_oligo_set | GPL14372_Probes_10544 | |||||
GPL14372_Probes_10545 | ||||||
GPL14372_Probes_10546 | ||||||
GPL14372_Probes_10547 | ||||||
Microarray_results | GPL14372_Probes_10544 | |||||
GPL14372_Probes_10545 | ||||||
GPL14372_Probes_10546 | ||||||
GPL14372_Probes_10547 | ||||||
RNASeq_FPKM | WBls:0000032 | 15.4923 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S71-39.8 | Curator_confirmed | WBPerson4055 | |||
Method | curated |