WormBase Tree Display for CDS: PPA12561
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| PPA12561 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (67) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S71-39.13 | ||
| DB_remark | PPA-MOG-5 protein; contains similarity to Pfam domains PF00106 (short chain dehydrogenase), PF00270 (DEAD/DEAH box helicase), PF00271 (Helicase conserved C-terminal domain), PF04408 (Helicase associated domain (HA2), winged-helix), PF07717 (Oligonucleotide/oligosaccharide-binding (OB)-fold); contains similarity to Interpro domains IPR011545 (DEAD/DEAH box helicase domain), IPR007502 (Helicase-associated domain), IPR036291 (NAD(P)-binding domain superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR002347 (Short-chain dehydrogenase/reductase SDR), IPR001650 (Helicase, C-terminal domain-like), IPR011709 (DEAD-box helicase, OB fold), IPR014001 (Helicase superfamily 1/2, ATP-binding domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00102115 | ||||
| Corresponding_transcript | PPA12561.1 | |||||
| Corresponding_protein | PP65213 | |||||
| Corresponding_oligo_set | GPL14372_Probes_10579 | |||||
| GPL14372_Probes_10580 | ||||||
| GPL14372_Probes_10581 | ||||||
| GPL14372_Probes_10582 | ||||||
| GPL14372_Probes_10584 | ||||||
| GPL14372_Probes_10586 | ||||||
| GPL14372_Probes_10587 | ||||||
| GPL14372_Probes_10590 | ||||||
| GPL14372_Probes_10591 | ||||||
| GPL14372_Probes_10592 | ||||||
| Matching_cDNA | AW096941 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_10579 | |||||
| GPL14372_Probes_10580 | ||||||
| GPL14372_Probes_10581 | ||||||
| GPL14372_Probes_10582 | ||||||
| GPL14372_Probes_10584 | ||||||
| GPL14372_Probes_10586 | ||||||
| GPL14372_Probes_10587 | ||||||
| GPL14372_Probes_10590 | ||||||
| GPL14372_Probes_10591 | ||||||
| GPL14372_Probes_10592 | ||||||
| RNASeq_FPKM | WBls:0000032 | 3.34951 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 19.118 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S71-39.13 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
