WormBase Tree Display for CDS: PPA12620
expand all nodes | collapse all nodes | view schema
PPA12620 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (12) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S71-36.30 | ||
DB_remark | PPA-ACP-7 protein; contains similarity to Pfam domain PF00328 (Histidine phosphatase superfamily (branch 2)); contains similarity to Interpro domains IPR000560 (Histidine phosphatase superfamily, clade-2), IPR029033 (Histidine phosphatase superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00102174 | ||||
Corresponding_transcript | PPA12620.1 | |||||
Corresponding_protein | PP59008 | |||||
Corresponding_oligo_set | GPL14372_Probes_10782 | |||||
GPL14372_Probes_10784 | ||||||
Matching_cDNA | AW115002 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_10782 | |||||
GPL14372_Probes_10784 | ||||||
RNASeq_FPKM | WBls:0000032 | 13.2717 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 84.2553 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S71-36.30 | Curator_confirmed | WBPerson4055 | |||
Method | curated |