WormBase Tree Display for CDS: PPA12623
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| PPA12623 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (13) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S71-36.60 | ||
| TREEFAM | TREEFAM_ID | TF323891 | ||||
| DB_remark | PPA-RAP-2 protein; contains similarity to Pfam domains PF00071 (Ras family), PF04969 (CS domain), PF05002 (SGS domain), PF09032 (Siah interacting protein, N terminal); contains similarity to Interpro domains IPR001806 (Small GTPase), IPR007699 (SGS domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR037201 (Calcyclin-binding protein, N-terminal), IPR005225 (Small GTP-binding protein domain), IPR015120 (Siah interacting protein, N-terminal), IPR008978 (HSP20-like chaperone), IPR007052 (CS domain), IPR020849 (Small GTPase, Ras-type) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00102177 | ||||
| Corresponding_transcript | PPA12623.1 | |||||
| Corresponding_protein | PP71695 | |||||
| Corresponding_oligo_set | GPL14372_Probes_10790 | |||||
| GPL14372_Probes_10791 | ||||||
| GPL14372_Probes_10792 | ||||||
| GPL14372_Probes_10793 | ||||||
| GPL14372_Probes_10794 | ||||||
| Microarray_results | GPL14372_Probes_10790 | |||||
| GPL14372_Probes_10791 | ||||||
| GPL14372_Probes_10792 | ||||||
| GPL14372_Probes_10793 | ||||||
| GPL14372_Probes_10794 | ||||||
| RNASeq_FPKM | WBls:0000032 | 6.4957 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 11.5082 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S71-36.60 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
