WormBase Tree Display for CDS: PPA12626

PPA12626 SMap: S_parent: Sequence: PPA_ChrI
  Structure: Source_exons: 1 40
      115 286
      382 509
      679 944
      1019 1151
      1368 1423
      1652 1711
      1954 2265
      2331 2531
  DB_info: Database: pristionchus.org cds gene-UMM-S71-35.33
      TREEFAM TREEFAM_ID TF300639
    DB_remark: PPA-FIB-1 protein; contains similarity to Pfam domains PF00380 (Ribosomal protein S9/S16), PF01269 (Fibrillarin); contains similarity to Interpro domains IPR020568 (Ribosomal protein uS5 domain 2-type superfamily), IPR000754 (Small ribosomal subunit protein uS9), IPR014721 (Small ribosomal subunit protein uS5 domain 2-type fold, subgroup), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase superfamily), IPR000692 (rRNA 2'-O-methyltransferase fibrillarin-like)
  Origin: From_laboratory: RS
    Species: Pristionchus pacificus
  Properties: Coding: CDS
      CDS_predicted_by: pristionchus.org
      Prediction_status: Partially_confirmed
  Visible: Gene: WBGene00102180
    Corresponding_transcript: PPA12626.1
      PPA12626.2
    Corresponding_protein: PP55386
    Corresponding_oligo_set: GPL14372_Probes_10796
      GPL14372_Probes_10797
      GPL14372_Probes_10798
      GPL14372_Probes_10799
    Matching_cDNA (227)
    Microarray_results: GPL14372_Probes_10796
      GPL14372_Probes_10797
      GPL14372_Probes_10798
      GPL14372_Probes_10799
    RNASeq_FPKM: WBls:0000032 185.84 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 144.072 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    Remark: [171116 mh6] renamed from gene-UMM-S71-35.33 Curator_confirmed: WBPerson4055
  Method: curated