WormBase Tree Display for CDS: PPA12843
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PPA12843 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (25) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-4.60 | ||
DB_remark | PPA-EGL-2 protein; contains similarity to Pfam domains PF00520 (Ion transport protein), PF13426 (PAS domain); contains similarity to Interpro domains IPR003949 (Potassium channel, voltage-dependent, EAG), IPR018490 (Cyclic nucleotide-binding domain superfamily), IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR000014 (PAS domain), IPR030171 (), IPR005821 (Ion transport domain), IPR001610 (PAC motif), IPR027359 (Voltage-dependent channel domain superfamily), IPR035965 (PAS domain superfamily), IPR014710 (RmlC-like jelly roll fold) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00102397 | ||||
Corresponding_transcript | PPA12843.1 | |||||
Corresponding_protein | PP71558 | |||||
Corresponding_oligo_set | GPL14372_Probes_49040 | |||||
GPL14372_Probes_49041 | ||||||
GPL14372_Probes_49042 | ||||||
GPL14372_Probes_49043 | ||||||
GPL14372_Probes_6386 | ||||||
GPL14372_Probes_6387 | ||||||
GPL14372_Probes_6389 | ||||||
GPL14372_Probes_6390 | ||||||
Microarray_results | GPL14372_Probes_6386 | |||||
GPL14372_Probes_6387 | ||||||
GPL14372_Probes_6389 | ||||||
GPL14372_Probes_6390 | ||||||
GPL14372_Probes_49040 | ||||||
GPL14372_Probes_49041 | ||||||
GPL14372_Probes_49042 | ||||||
GPL14372_Probes_49043 | ||||||
RNASeq_FPKM | WBls:0000032 | 1.14229 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 1.34898 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S71-4.60 | Curator_confirmed | WBPerson4055 | |||
Method | curated |