Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: PPA12843

expand all nodes | collapse all nodes | view schema

Name Class

PPA12843SMapS_parentSequencePPA_ChrI
StructureSource_exons (25)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S71-4.60
DB_remarkPPA-EGL-2 protein; contains similarity to Pfam domains PF00520 (Ion transport protein), PF13426 (PAS domain); contains similarity to Interpro domains IPR003949 (Potassium channel, voltage-dependent, EAG), IPR018490 (Cyclic nucleotide-binding domain superfamily), IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR000014 (PAS domain), IPR030171 (), IPR005821 (Ion transport domain), IPR001610 (PAC motif), IPR027359 (Voltage-dependent channel domain superfamily), IPR035965 (PAS domain superfamily), IPR014710 (RmlC-like jelly roll fold)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00102397
Corresponding_transcriptPPA12843.1
Corresponding_proteinPP71558
Corresponding_oligo_setGPL14372_Probes_49040
GPL14372_Probes_49041
GPL14372_Probes_49042
GPL14372_Probes_49043
GPL14372_Probes_6386
GPL14372_Probes_6387
GPL14372_Probes_6389
GPL14372_Probes_6390
Microarray_resultsGPL14372_Probes_6386
GPL14372_Probes_6387
GPL14372_Probes_6389
GPL14372_Probes_6390
GPL14372_Probes_49040
GPL14372_Probes_49041
GPL14372_Probes_49042
GPL14372_Probes_49043
RNASeq_FPKMWBls:00000321.14229From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001011.34898From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S71-4.60Curator_confirmedWBPerson4055
Methodcurated