WormBase Tree Display for CDS: PPA12846
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PPA12846 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (21) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-3.15 | ||
DB_remark | PPA-EAT-6 protein; contains similarity to Pfam domains PF00122 (E1-E2 ATPase), PF00689 (Cation transporting ATPase, C-terminus), PF00690 (Cation transporter/ATPase, N-terminus), PF13246 (Cation transport ATPase (P-type)); contains similarity to Interpro domains IPR023298 (P-type ATPase, transmembrane domain superfamily), IPR036412 (HAD-like superfamily), IPR005775 (P-type ATPase subfamily IIC, subunit alpha), IPR008250 (P-type ATPase, A domain superfamily), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR001757 (P-type ATPase), IPR023299 (P-type ATPase, cytoplasmic domain N), IPR023214 (HAD superfamily), IPR006068 (Cation-transporting P-type ATPase, C-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00102400 | ||||
Corresponding_transcript | PPA12846.1 | |||||
Corresponding_protein | PP64146 | |||||
Corresponding_oligo_set | GPL14372_Probes_49030 | |||||
GPL14372_Probes_49031 | ||||||
GPL14372_Probes_49032 | ||||||
GPL14372_Probes_49033 | ||||||
Matching_cDNA | FE938274 | Inferred_automatically | transcript_builder.pl | |||
FE938068 | Inferred_automatically | transcript_builder.pl | ||||
FE940309 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_49030 | |||||
GPL14372_Probes_49031 | ||||||
GPL14372_Probes_49032 | ||||||
GPL14372_Probes_49033 | ||||||
RNASeq_FPKM | WBls:0000032 | 16.3612 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 22.9444 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S71-3.15 | Curator_confirmed | WBPerson4055 | |||
Method | curated |