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WormBase Tree Display for CDS: PPA12846

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Name Class

PPA12846SMapS_parentSequencePPA_ChrI
StructureSource_exons (21)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S71-3.15
DB_remarkPPA-EAT-6 protein; contains similarity to Pfam domains PF00122 (E1-E2 ATPase), PF00689 (Cation transporting ATPase, C-terminus), PF00690 (Cation transporter/ATPase, N-terminus), PF13246 (Cation transport ATPase (P-type)); contains similarity to Interpro domains IPR023298 (P-type ATPase, transmembrane domain superfamily), IPR036412 (HAD-like superfamily), IPR005775 (P-type ATPase subfamily IIC, subunit alpha), IPR008250 (P-type ATPase, A domain superfamily), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR001757 (P-type ATPase), IPR023299 (P-type ATPase, cytoplasmic domain N), IPR023214 (HAD superfamily), IPR006068 (Cation-transporting P-type ATPase, C-terminal)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00102400
Corresponding_transcriptPPA12846.1
Corresponding_proteinPP64146
Corresponding_oligo_setGPL14372_Probes_49030
GPL14372_Probes_49031
GPL14372_Probes_49032
GPL14372_Probes_49033
Matching_cDNAFE938274Inferred_automaticallytranscript_builder.pl
FE938068Inferred_automaticallytranscript_builder.pl
FE940309Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_49030
GPL14372_Probes_49031
GPL14372_Probes_49032
GPL14372_Probes_49033
RNASeq_FPKMWBls:000003216.3612From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010122.9444From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S71-3.15Curator_confirmedWBPerson4055
Methodcurated