WormBase Tree Display for CDS: PPA12940
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PPA12940 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 123 | |||
303 | 401 | |||||
2237 | 2351 | |||||
2519 | 2662 | |||||
2842 | 2945 | |||||
3315 | 3420 | |||||
3905 | 4026 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S2844-10.55 | ||
DB_remark | contains similarity to Pfam domain PF10277 (Frag1/DRAM/Sfk1 family); contains similarity to Interpro domains IPR019402 (Frag1/DRAM/Sfk1), IPR039545 (Post-GPI attachment to proteins factor 2) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00102494 | ||||
Corresponding_transcript | PPA12940.1 | |||||
Corresponding_protein | PP58072 | |||||
Corresponding_oligo_set | GPL14372_Probes_81056 | |||||
GPL14372_Probes_81057 | ||||||
Microarray_results | GPL14372_Probes_81056 | |||||
GPL14372_Probes_81057 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 6.2501 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S2844-10.55 | Curator_confirmed | WBPerson4055 | |||
Method | curated |