WormBase Tree Display for CDS: PPA12979
expand all nodes | collapse all nodes | view schema
PPA12979 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (41) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-8.16 | ||
TREEFAM | TREEFAM_ID | TF314566 | ||||
DB_remark | PPA-NXF-1 protein; contains similarity to Pfam domains PF03943 (TAP C-terminal domain), PF09162 (Tap, RNA-binding); contains similarity to Interpro domains IPR030217 (Nuclear RNA export factor), IPR035979 (RNA-binding domain superfamily), IPR015245 (Nuclear RNA export factor Tap, RNA-binding domain), IPR005637 (TAP C-terminal (TAP-C) domain), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR009060 (UBA-like superfamily), IPR032675 (Leucine-rich repeat domain superfamily), IPR032710 (NTF2-like domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00102533 | ||||
Corresponding_transcript | PPA12979.1 | |||||
Corresponding_protein | PP63397 | |||||
Corresponding_oligo_set | GPL14372_Probes_26275 | |||||
GPL14372_Probes_26276 | ||||||
GPL14372_Probes_26277 | ||||||
GPL14372_Probes_26278 | ||||||
GPL14372_Probes_81110 | ||||||
GPL14372_Probes_81111 | ||||||
Microarray_results | GPL14372_Probes_26275 | |||||
GPL14372_Probes_26276 | ||||||
GPL14372_Probes_26277 | ||||||
GPL14372_Probes_26278 | ||||||
GPL14372_Probes_81110 | ||||||
GPL14372_Probes_81111 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2844-8.16 | Curator_confirmed | WBPerson4055 | |||
Method | curated |