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WormBase Tree Display for CDS: PPA12979

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Name Class

PPA12979SMapS_parentSequencePPA_ChrI
StructureSource_exons (41)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S2844-8.16
TREEFAMTREEFAM_IDTF314566
DB_remarkPPA-NXF-1 protein; contains similarity to Pfam domains PF03943 (TAP C-terminal domain), PF09162 (Tap, RNA-binding); contains similarity to Interpro domains IPR030217 (Nuclear RNA export factor), IPR035979 (RNA-binding domain superfamily), IPR015245 (Nuclear RNA export factor Tap, RNA-binding domain), IPR005637 (TAP C-terminal (TAP-C) domain), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR009060 (UBA-like superfamily), IPR032675 (Leucine-rich repeat domain superfamily), IPR032710 (NTF2-like domain superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
Start_not_found1
VisibleGeneWBGene00102533
Corresponding_transcriptPPA12979.1
Corresponding_proteinPP63397
Corresponding_oligo_setGPL14372_Probes_26275
GPL14372_Probes_26276
GPL14372_Probes_26277
GPL14372_Probes_26278
GPL14372_Probes_81110
GPL14372_Probes_81111
Microarray_resultsGPL14372_Probes_26275
GPL14372_Probes_26276
GPL14372_Probes_26277
GPL14372_Probes_26278
GPL14372_Probes_81110
GPL14372_Probes_81111
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S2844-8.16Curator_confirmedWBPerson4055
Methodcurated