WormBase Tree Display for CDS: PPA13159
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| PPA13159 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (37) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S139-20.44 | ||
| DB_remark | contains similarity to Pfam domains PF00076 (RNA recognition motif), PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)), PF00153 (Mitochondrial carrier protein), PF13499 (EF-hand domain pair); contains similarity to Interpro domains IPR002048 (EF-hand domain), IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain superfamily), IPR018108 (Mitochondrial substrate/solute carrier), IPR013088 (Zinc finger, NHR/GATA-type), IPR035979 (RNA-binding domain superfamily), IPR011992 (EF-hand domain pair), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily), IPR000504 (RNA recognition motif domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00102713 | ||||
| Corresponding_transcript | PPA13159.1 | |||||
| Corresponding_protein | PP51730 | |||||
| Corresponding_oligo_set | GPL14372_Probes_54659 | |||||
| GPL14372_Probes_9233 | ||||||
| GPL14372_Probes_9234 | ||||||
| GPL14372_Probes_9235 | ||||||
| GPL14372_Probes_9236 | ||||||
| Matching_cDNA | GQ337700 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_9233 | |||||
| GPL14372_Probes_9234 | ||||||
| GPL14372_Probes_9235 | ||||||
| GPL14372_Probes_9236 | ||||||
| GPL14372_Probes_54659 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0.975329 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S139-20.44 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
