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WormBase Tree Display for CDS: PPA13215

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Name Class

PPA13215SMapS_parentSequencePPA_ChrI
StructureSource_exons (29)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S139-12.22
TREEFAMTREEFAM_IDTF105714
DB_remarkcontains similarity to Pfam domains PF00270 (DEAD/DEAH box helicase), PF00271 (Helicase conserved C-terminal domain), PF07679 (Immunoglobulin I-set domain); contains similarity to Interpro domains IPR011545 (DEAD/DEAH box helicase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR001650 (Helicase, C-terminal domain-like), IPR013098 (Immunoglobulin I-set), IPR013783 (Immunoglobulin-like fold), IPR036179 (Immunoglobulin-like domain superfamily), IPR014001 (Helicase superfamily 1/2, ATP-binding domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00102769
Corresponding_transcriptPPA13215.1
Corresponding_proteinPP62797
Corresponding_oligo_setGPL14372_Probes_31065
GPL14372_Probes_31067
GPL14372_Probes_31068
GPL14372_Probes_31069
GPL14372_Probes_88027
GPL14372_Probes_88029
GPL14372_Probes_88030
Microarray_resultsGPL14372_Probes_31065
GPL14372_Probes_31067
GPL14372_Probes_31068
GPL14372_Probes_31069
GPL14372_Probes_88027
GPL14372_Probes_88029
GPL14372_Probes_88030
RNASeq_FPKMWBls:000003213.7411From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001018.11387From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S139-12.22Curator_confirmedWBPerson4055
Methodcurated