WormBase Tree Display for CDS: PPA13215
expand all nodes | collapse all nodes | view schema
PPA13215 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (29) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S139-12.22 | ||
TREEFAM | TREEFAM_ID | TF105714 | ||||
DB_remark | contains similarity to Pfam domains PF00270 (DEAD/DEAH box helicase), PF00271 (Helicase conserved C-terminal domain), PF07679 (Immunoglobulin I-set domain); contains similarity to Interpro domains IPR011545 (DEAD/DEAH box helicase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR001650 (Helicase, C-terminal domain-like), IPR013098 (Immunoglobulin I-set), IPR013783 (Immunoglobulin-like fold), IPR036179 (Immunoglobulin-like domain superfamily), IPR014001 (Helicase superfamily 1/2, ATP-binding domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00102769 | ||||
Corresponding_transcript | PPA13215.1 | |||||
Corresponding_protein | PP62797 | |||||
Corresponding_oligo_set | GPL14372_Probes_31065 | |||||
GPL14372_Probes_31067 | ||||||
GPL14372_Probes_31068 | ||||||
GPL14372_Probes_31069 | ||||||
GPL14372_Probes_88027 | ||||||
GPL14372_Probes_88029 | ||||||
GPL14372_Probes_88030 | ||||||
Microarray_results | GPL14372_Probes_31065 | |||||
GPL14372_Probes_31067 | ||||||
GPL14372_Probes_31068 | ||||||
GPL14372_Probes_31069 | ||||||
GPL14372_Probes_88027 | ||||||
GPL14372_Probes_88029 | ||||||
GPL14372_Probes_88030 | ||||||
RNASeq_FPKM | WBls:0000032 | 13.7411 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 8.11387 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S139-12.22 | Curator_confirmed | WBPerson4055 | |||
Method | curated |