WormBase Tree Display for CDS: PPA13684
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PPA13684 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons (15) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2852-2.18 | ||
TREEFAM | TREEFAM_ID | TF105811 | ||||
DB_remark | contains similarity to Pfam domain PF10343 (Queuosine salvage protein); contains similarity to Interpro domain IPR019438 (Queuosine salvage protein family) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00103238 | ||||
Corresponding_transcript | PPA13684.1 | |||||
Corresponding_protein | PP63404 | |||||
Corresponding_oligo_set | GPL14372_Probes_60478 | |||||
GPL14372_Probes_60479 | ||||||
GPL14372_Probes_60480 | ||||||
GPL14372_Probes_60481 | ||||||
Matching_cDNA | FG094717 | Inferred_automatically | transcript_builder.pl | |||
FG095034 | Inferred_automatically | transcript_builder.pl | ||||
FG097525 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_60478 | |||||
GPL14372_Probes_60479 | ||||||
GPL14372_Probes_60480 | ||||||
GPL14372_Probes_60481 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 4.19009 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2852-2.18 | Curator_confirmed | WBPerson4055 | |||
Method | curated |