WormBase Tree Display for CDS: PPA13935
expand all nodes | collapse all nodes | view schema
PPA13935 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (33) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-22.33 | ||
DB_remark | contains similarity to Pfam domains PF01344 (Kelch motif), PF07707 (BTB And C-terminal Kelch); contains similarity to Interpro domains IPR006652 (Kelch repeat type 1), IPR011705 (BTB/Kelch-associated), IPR015915 (Kelch-type beta propeller) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00103489 | ||||
Corresponding_transcript | PPA13935.1 | |||||
Corresponding_protein | PP66783 | |||||
Corresponding_oligo_set (12) | ||||||
Matching_cDNA | FG095041 | Inferred_automatically | transcript_builder.pl | |||
FG096933 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results (12) | ||||||
RNASeq_FPKM | WBls:0000032 | 2.2371 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 35.6656 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S71-22.33 | Curator_confirmed | WBPerson4055 | |||
Method | curated |