WormBase Tree Display for CDS: PPA13937
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| PPA13937 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 264 | |||
| 311 | 439 | |||||
| 492 | 635 | |||||
| 716 | 859 | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S71-22.25 | ||
| DB_remark | contains similarity to Pfam domain PF00538 (linker histone H1 and H5 family); contains similarity to Interpro domains IPR005819 (Linker histone H1/H5), IPR005818 (Linker histone H1/H5, domain H15), IPR036390 (Winged helix DNA-binding domain superfamily), IPR036388 (Winged helix-like DNA-binding domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00103491 | ||||
| Corresponding_transcript | PPA13937.1 | |||||
| Corresponding_protein | PP53455 | |||||
| Corresponding_oligo_set | GPL14372_Probes_50286 | |||||
| GPL14372_Probes_50287 | ||||||
| GPL14372_Probes_50289 | ||||||
| Matching_cDNA | FG098216 | Inferred_automatically | transcript_builder.pl | |||
| FG094909 | Inferred_automatically | transcript_builder.pl | ||||
| FG100719 | Inferred_automatically | transcript_builder.pl | ||||
| AA193756 | Inferred_automatically | transcript_builder.pl | ||||
| CK928179 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_50286 | |||||
| GPL14372_Probes_50287 | ||||||
| GPL14372_Probes_50289 | ||||||
| RNASeq_FPKM | WBls:0000032 | 78.0858 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 61.4932 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S71-22.25 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
