WormBase Tree Display for CDS: PPA13958
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| PPA13958 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (33) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S71-21.5 | ||
| TREEFAM | TREEFAM_ID | TF312801 | ||||
| DB_remark | contains similarity to Pfam domains PF00160 (Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD), PF01066 (CDP-alcohol phosphatidyltransferase), PF05206 (Methyltransferase TRM13), PF05253 (U11-48K-like CHHC zinc finger), PF11722 (CCCH zinc finger in TRM13 protein); contains similarity to Interpro domains IPR007871 (Methyltransferase TRM13), IPR021721 (Zinc finger, CCCH-type, TRM13), IPR014472 (Choline/ethanolamine phosphotransferase), IPR029000 (Cyclophilin-like domain superfamily), IPR000462 (CDP-alcohol phosphatidyltransferase), IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR043130 (CDP-alcohol phosphatidyltransferase, transmembrane domain), IPR022776 (TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00103512 | ||||
| Corresponding_transcript | PPA13958.1 | |||||
| Corresponding_protein | PP51523 | |||||
| Corresponding_oligo_set (18) | ||||||
| Matching_cDNA | FG102161 | Inferred_automatically | transcript_builder.pl | |||
| FG096159 | Inferred_automatically | transcript_builder.pl | ||||
| FG103844 | Inferred_automatically | transcript_builder.pl | ||||
| CO870613 | Inferred_automatically | transcript_builder.pl | ||||
| FG103293 | Inferred_automatically | transcript_builder.pl | ||||
| EB184465 | Inferred_automatically | transcript_builder.pl | ||||
| FG104430 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results (18) | ||||||
| RNASeq_FPKM | WBls:0000032 | 22.3222 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 15.0636 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S71-21.5 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
