WormBase Tree Display for CDS: PPA14006
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| PPA14006 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (59) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMA-S71-19.56 | ||
| DB_remark | PPA-ZIPT-16 protein; contains similarity to Pfam domains PF00004 (ATPase family associated with various cellular activities (AAA)), PF02535 (ZIP Zinc transporter), PF08519 (Replication factor RFC1 C terminal domain); contains similarity to Interpro domains IPR013725 (DNA replication factor RFC1, C-terminal), IPR003959 (ATPase, AAA-type, core), IPR008921 (DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR003593 (AAA+ ATPase domain), IPR003689 (Zinc/iron permease) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00103560 | ||||
| Corresponding_transcript | PPA14006.1 | |||||
| Corresponding_protein | PP58230 | |||||
| Corresponding_oligo_set (16) | ||||||
| Matching_cDNA | FG101782 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results (16) | ||||||
| RNASeq_FPKM | WBls:0000032 | 6.41401 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 13.6339 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMA-S71-19.56 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
