WormBase Tree Display for CDS: PPA14014
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| PPA14014 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 2 | |||
| 94 | 211 | |||||
| 388 | 510 | |||||
| 980 | 1090 | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S71-18.81 | ||
| TREEFAM | TREEFAM_ID | TF319595 | ||||
| DB_remark | PPA-SNR-4 protein; contains similarity to Pfam domain PF01423 (LSM domain); contains similarity to Interpro domains IPR027248 (Small nuclear ribonucleoprotein Sm D2), IPR001163 (Sm domain, eukaryotic/archaea-type), IPR010920 (LSM domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00103568 | ||||
| Corresponding_transcript | PPA14014.1 | |||||
| Corresponding_protein | PP71848 | |||||
| Matching_cDNA | AA193768 | Inferred_automatically | transcript_builder.pl | |||
| FE932616 | Inferred_automatically | transcript_builder.pl | ||||
| FG096322 | Inferred_automatically | transcript_builder.pl | ||||
| FG099571 | Inferred_automatically | transcript_builder.pl | ||||
| FG100745 | Inferred_automatically | transcript_builder.pl | ||||
| FG101050 | Inferred_automatically | transcript_builder.pl | ||||
| FG099617 | Inferred_automatically | transcript_builder.pl | ||||
| DV018763 | Inferred_automatically | transcript_builder.pl | ||||
| FG094782 | Inferred_automatically | transcript_builder.pl | ||||
| RNASeq_FPKM | WBls:0000032 | 273.692 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 293.971 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S71-18.81 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
