WormBase Tree Display for CDS: PPA14025
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PPA14025 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 74 | |||
127 | 247 | |||||
297 | 500 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-19.63 | ||
TREEFAM | TREEFAM_ID | TF105635 | ||||
DB_remark | contains similarity to Pfam domain PF13233 (Complex1_LYR-like); contains similarity to Interpro domain IPR008381 (Succinate dehydrogenase assembly factor 3, mitochondrial) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00103579 | ||||
Corresponding_transcript | PPA14025.1 | |||||
PPA14025.2 | ||||||
Corresponding_protein | PP01009 | |||||
Corresponding_oligo_set | GPL14372_Probes_50057 | |||||
GPL14372_Probes_50058 | ||||||
GPL14372_Probes_50059 | ||||||
Matching_cDNA | CN656599 | Inferred_automatically | transcript_builder.pl | |||
FG106216 | Inferred_automatically | transcript_builder.pl | ||||
FG104739 | Inferred_automatically | transcript_builder.pl | ||||
FG103229 | Inferred_automatically | transcript_builder.pl | ||||
FG106557 | Inferred_automatically | transcript_builder.pl | ||||
CO870560 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_50057 | |||||
GPL14372_Probes_50058 | ||||||
GPL14372_Probes_50059 | ||||||
RNASeq_FPKM | WBls:0000032 | 102.852 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 99.432 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S71-19.63 | Curator_confirmed | WBPerson4055 | |||
Method | curated |