WormBase Tree Display for CDS: PPA14030
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PPA14030 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 45 | |||
90 | 275 | |||||
582 | 683 | |||||
744 | 848 | |||||
892 | 1021 | |||||
1083 | 1384 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-19.60 | ||
TREEFAM | TREEFAM_ID | TF314653 | ||||
DB_remark | contains similarity to Pfam domain PF07047 (Optic atrophy 3 protein (OPA3)); contains similarity to Interpro domain IPR010754 (Optic atrophy 3-like) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00103584 | ||||
Corresponding_transcript | PPA14030.1 | |||||
Corresponding_protein | PP71461 | |||||
Corresponding_oligo_set | GPL14372_Probes_50041 | |||||
GPL14372_Probes_50042 | ||||||
GPL14372_Probes_50043 | ||||||
Microarray_results | GPL14372_Probes_50041 | |||||
GPL14372_Probes_50042 | ||||||
GPL14372_Probes_50043 | ||||||
RNASeq_FPKM | WBls:0000032 | 4.83913 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 17.1484 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S71-19.60 | Curator_confirmed | WBPerson4055 | |||
Method | curated |