WormBase Tree Display for CDS: PPA14039
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PPA14039 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (20) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S71-18.13 | ||
TREEFAM | TREEFAM_ID | TF317750 | ||||
DB_remark | contains similarity to Pfam domain PF05046 (Mitochondrial large subunit ribosomal protein (Img2)); contains similarity to Interpro domains IPR011011 (Zinc finger, FYVE/PHD-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR007740 (Large ribosomal subunit protein mL49), IPR040043 (Actin maturation protease) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00103593 | ||||
Corresponding_transcript | PPA14039.1 | |||||
Corresponding_protein | PP60083 | |||||
Corresponding_oligo_set (11) | ||||||
Microarray_results (11) | ||||||
RNASeq_FPKM | WBls:0000032 | 56.2937 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 55.4015 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S71-18.13 | Curator_confirmed | WBPerson4055 | |||
Method | curated |