WormBase Tree Display for CDS: PPA14041
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PPA14041 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (23) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S71-18.4 | ||
TREEFAM | TREEFAM_ID | TF105121 | ||||
DB_remark | PPA-GCK-2 protein; contains similarity to Pfam domains PF00069 (Protein kinase domain), PF00780 (CNH domain); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR000719 (Protein kinase domain), IPR001180 (Citron homology (CNH) domain), IPR021160 (Mitogen-activated protein (MAP) kinase kinase kinase kinase) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00103595 | ||||
Corresponding_transcript | PPA14041.1 | |||||
Corresponding_protein | PP58603 | |||||
Corresponding_oligo_set | GPL14372_Probes_49959 | |||||
GPL14372_Probes_49960 | ||||||
GPL14372_Probes_49961 | ||||||
GPL14372_Probes_49962 | ||||||
Matching_cDNA | AW052266 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_49959 | |||||
GPL14372_Probes_49960 | ||||||
GPL14372_Probes_49961 | ||||||
GPL14372_Probes_49962 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S71-18.4 | Curator_confirmed | WBPerson4055 | |||
Method | curated |