WormBase Tree Display for CDS: PPA14047
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| PPA14047 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (62) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMA-S71-17.26 | ||
| DB_remark | PPA-MLT-11 protein; contains similarity to Pfam domains PF00014 (Kunitz/Bovine pancreatic trypsin inhibitor domain), PF00086 (Thyroglobulin type-1 repeat), PF14625 (Lustrin, cysteine-rich repeated domain); contains similarity to Interpro domains IPR000716 (Thyroglobulin type-1), IPR028150 (Lustrin, cysteine-rich repeated), IPR036857 (Thyroglobulin type-1 superfamily), IPR036880 (Pancreatic trypsin inhibitor Kunitz domain superfamily), IPR002223 (Pancreatic trypsin inhibitor Kunitz domain), IPR006150 (Cysteine-rich repeat) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00103601 | ||||
| Corresponding_transcript | PPA14047.1 | |||||
| Corresponding_protein | PP56206 | |||||
| Corresponding_oligo_set (26) | ||||||
| Matching_cDNA | AW052578 | Inferred_automatically | transcript_builder.pl | |||
| AI989239 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results (26) | ||||||
| RNASeq_FPKM | WBls:0000032 | 7.21473 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 16.3579 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMA-S71-17.26 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
