WormBase Tree Display for CDS: PPA14138
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PPA14138 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (22) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S71-13.37 | ||
TREEFAM | TREEFAM_ID | TF312922 | ||||
DB_remark | contains similarity to Pfam domain PF02995 (Protein of unknown function (DUF229)); contains similarity to Interpro domains IPR004245 (Protein of unknown function DUF229), IPR017850 (Alkaline-phosphatase-like, core domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00103692 | ||||
Corresponding_transcript | PPA14138.1 | |||||
Corresponding_protein | PP63168 | |||||
Corresponding_oligo_set | GPL14372_Probes_49594 | |||||
GPL14372_Probes_49595 | ||||||
GPL14372_Probes_49596 | ||||||
GPL14372_Probes_49597 | ||||||
Matching_cDNA | AI989214 | Inferred_automatically | transcript_builder.pl | |||
EB183072 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_49594 | |||||
GPL14372_Probes_49595 | ||||||
GPL14372_Probes_49596 | ||||||
GPL14372_Probes_49597 | ||||||
RNASeq_FPKM | WBls:0000032 | 9.82354 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 18.2306 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMS-S71-13.37 | Curator_confirmed | WBPerson4055 | |||
Method | curated |