WormBase Tree Display for CDS: PPA14176
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| PPA14176 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (20) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S71-11.15 | ||
| TREEFAM | TREEFAM_ID | TF313052 | ||||
| DB_remark | contains similarity to Pfam domains PF00149 (Calcineurin-like phosphoesterase), PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain), PF14008 (Iron/zinc purple acid phosphatase-like protein C), PF16656 (Purple acid Phosphatase, N-terminal domain); contains similarity to Interpro domains IPR029052 (Metallo-dependent phosphatase-like), IPR002486 (Nematode cuticle collagen, N-terminal), IPR008963 (Purple acid phosphatase-like, N-terminal), IPR008160 (Collagen triple helix repeat), IPR015914 (Purple acid phosphatase, N-terminal), IPR004843 (Calcineurin-like phosphoesterase domain, ApaH type), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00103730 | ||||
| Corresponding_transcript | PPA14176.1 | |||||
| Corresponding_protein | PP53605 | |||||
| Corresponding_oligo_set | GPL14372_Probes_49449 | |||||
| GPL14372_Probes_49450 | ||||||
| GPL14372_Probes_49451 | ||||||
| GPL14372_Probes_49452 | ||||||
| GPL14372_Probes_49453 | ||||||
| GPL14372_Probes_49454 | ||||||
| GPL14372_Probes_49455 | ||||||
| GPL14372_Probes_49456 | ||||||
| GPL14372_Probes_49457 | ||||||
| Matching_cDNA | EB183700 | Inferred_automatically | transcript_builder.pl | |||
| EB184343 | Inferred_automatically | transcript_builder.pl | ||||
| FE933784 | Inferred_automatically | transcript_builder.pl | ||||
| FE932660 | Inferred_automatically | transcript_builder.pl | ||||
| EB184189 | Inferred_automatically | transcript_builder.pl | ||||
| EB183394 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_49449 | |||||
| GPL14372_Probes_49450 | ||||||
| GPL14372_Probes_49451 | ||||||
| GPL14372_Probes_49452 | ||||||
| GPL14372_Probes_49453 | ||||||
| GPL14372_Probes_49454 | ||||||
| GPL14372_Probes_49455 | ||||||
| GPL14372_Probes_49456 | ||||||
| GPL14372_Probes_49457 | ||||||
| RNASeq_FPKM | WBls:0000032 | 11.7904 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 33.07 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S71-11.15 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
