WormBase Tree Display for CDS: PPA14180
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| PPA14180 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (29) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S71-11.3 | ||
| TREEFAM | TREEFAM_ID | TF105196 | ||||
| DB_remark | PPA-HAF-2.2 protein; contains similarity to Pfam domains PF00005 (ABC transporter), PF00664 (ABC transporter transmembrane region); contains similarity to Interpro domains IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR039421 (Type 1 protein exporter), IPR003439 (ABC transporter-like, ATP-binding domain), IPR036640 (ABC transporter type 1, transmembrane domain superfamily), IPR003593 (AAA+ ATPase domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00103734 | ||||
| Corresponding_transcript | PPA14180.1 | |||||
| Corresponding_protein | PP54344 | |||||
| Corresponding_oligo_set | GPL14372_Probes_49441 | |||||
| GPL14372_Probes_49442 | ||||||
| GPL14372_Probes_49444 | ||||||
| GPL14372_Probes_49446 | ||||||
| Microarray_results | GPL14372_Probes_49441 | |||||
| GPL14372_Probes_49442 | ||||||
| GPL14372_Probes_49444 | ||||||
| GPL14372_Probes_49446 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0.930912 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 1.09934 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S71-11.3 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
