WormBase Tree Display for CDS: PPA14186
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PPA14186 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (46) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-11.65 | ||
DB_remark | PPA-GLY-7 protein; contains similarity to Pfam domains PF00535 (Glycosyl transferase family 2), PF00652 (Ricin-type beta-trefoil lectin domain); contains similarity to Interpro domains IPR035992 (Ricin B-like lectins), IPR000772 (Ricin B, lectin domain), IPR001173 (Glycosyltransferase 2-like), IPR029044 (Nucleotide-diphospho-sugar transferases) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00103740 | ||||
Corresponding_transcript | PPA14186.1 | |||||
Corresponding_protein | PP72128 | |||||
Corresponding_oligo_set | GPL14372_Probes_49426 | |||||
GPL14372_Probes_49427 | ||||||
GPL14372_Probes_49429 | ||||||
Microarray_results | GPL14372_Probes_49426 | |||||
GPL14372_Probes_49427 | ||||||
GPL14372_Probes_49429 | ||||||
RNASeq_FPKM | WBls:0000032 | 1.73295 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 2.04649 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S71-11.65 | Curator_confirmed | WBPerson4055 | |||
Method | curated |