WormBase Tree Display for CDS: PPA14211
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PPA14211 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (16) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-9.38 | ||
TREEFAM | TREEFAM_ID | TF300603 | ||||
DB_remark | PPA-ASNS-1 protein; contains similarity to Pfam domains PF00733 (Asparagine synthase), PF13537 (Glutamine amidotransferase domain); contains similarity to Interpro domains IPR001962 (Asparagine synthase), IPR029055 (Nucleophile aminohydrolases, N-terminal), IPR017932 (Glutamine amidotransferase type 2 domain), IPR006426 (Asparagine synthase, glutamine-hydrolyzing), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00103765 | ||||
Corresponding_transcript | PPA14211.1 | |||||
Corresponding_protein | PP13661 | |||||
Corresponding_oligo_set | GPL14372_Probes_49375 | |||||
GPL14372_Probes_49376 | ||||||
Microarray_results | GPL14372_Probes_49375 | |||||
GPL14372_Probes_49376 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S71-9.38 | Curator_confirmed | WBPerson4055 | |||
Method | curated |