WormBase Tree Display for CDS: PPA14229
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| PPA14229 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (28) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S71-9.21 | ||
| DB_remark | PPA-GLR-3 protein; contains similarity to Pfam domains PF00060 (Ligand-gated ion channel), PF01094 (Receptor family ligand binding region), PF10613 (Ligated ion channel L-glutamate- and glycine-binding site); contains similarity to Interpro domains IPR001320 (Ionotropic glutamate receptor, C-terminal), IPR001828 (Receptor, ligand binding region), IPR028082 (Periplasmic binding protein-like I), IPR019594 (Ionotropic glutamate receptor, L-glutamate and glycine-binding domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00103783 | ||||
| Corresponding_transcript | PPA14229.1 | |||||
| Corresponding_protein | PP61609 | |||||
| Corresponding_oligo_set | GPL14372_Probes_49323 | |||||
| GPL14372_Probes_49324 | ||||||
| GPL14372_Probes_49325 | ||||||
| Microarray_results | GPL14372_Probes_49323 | |||||
| GPL14372_Probes_49324 | ||||||
| GPL14372_Probes_49325 | ||||||
| RNASeq_FPKM | WBls:0000032 | 1.31214 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S71-9.21 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
