WormBase Tree Display for CDS: PPA14249
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PPA14249 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 115 | |||
236 | 313 | |||||
361 | 435 | |||||
479 | 619 | |||||
664 | 757 | |||||
803 | 854 | |||||
900 | 1001 | |||||
1045 | 1110 | |||||
1161 | 1238 | |||||
1283 | 1384 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-8.14 | ||
DB_remark | contains similarity to Pfam domain PF00178 (Ets-domain); contains similarity to Interpro domains IPR036390 (Winged helix DNA-binding domain superfamily), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR000418 (Ets domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00103803 | ||||
Corresponding_transcript | PPA14249.1 | |||||
Corresponding_protein | PP53736 | |||||
Corresponding_oligo_set | GPL14372_Probes_49270 | |||||
Microarray_results | GPL14372_Probes_49270 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S71-8.14 | Curator_confirmed | WBPerson4055 | |||
Method | curated |