WormBase Tree Display for CDS: PPA14257
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PPA14257 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (25) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-40.8 | ||
DB_remark | contains similarity to Pfam domain PF01090 (Ribosomal protein S19e); contains similarity to Interpro domains IPR038111 (), IPR036227 (Large ribosomal subunit protein uL15/eL18 superfamily), IPR036390 (Winged helix DNA-binding domain superfamily), IPR009644 (Ribitol-5-phosphate transferase FKTN-related), IPR001266 (Small ribosomal subunit protein eS19) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00103811 | ||||
Corresponding_transcript | PPA14257.1 | |||||
Corresponding_protein | PP55979 | |||||
Corresponding_oligo_set | GPL14372_Probes_30875 | |||||
GPL14372_Probes_30876 | ||||||
GPL14372_Probes_833 | ||||||
GPL14372_Probes_834 | ||||||
GPL14372_Probes_836 | ||||||
GPL14372_Probes_837 | ||||||
GPL14372_Probes_838 | ||||||
GPL14372_Probes_839 | ||||||
Microarray_results | GPL14372_Probes_833 | |||||
GPL14372_Probes_834 | ||||||
GPL14372_Probes_836 | ||||||
GPL14372_Probes_837 | ||||||
GPL14372_Probes_838 | ||||||
GPL14372_Probes_839 | ||||||
GPL14372_Probes_30875 | ||||||
GPL14372_Probes_30876 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S7-40.8 | Curator_confirmed | WBPerson4055 | |||
Method | curated |