WormBase Tree Display for CDS: PPA14704
expand all nodes | collapse all nodes | view schema
PPA14704 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 104 | |||
231 | 297 | |||||
341 | 390 | |||||
439 | 535 | |||||
606 | 728 | |||||
852 | 956 | |||||
1038 | 1130 | |||||
1235 | 1310 | |||||
1410 | 1524 | |||||
1593 | 1692 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S41-30.33 | ||
DB_remark | contains similarity to Pfam domain PF00112 (Papain family cysteine protease); contains similarity to Interpro domains IPR038765 (Papain-like cysteine peptidase superfamily), IPR000668 (Peptidase C1A, papain C-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00104258 | ||||
Corresponding_transcript | PPA14704.1 | |||||
Corresponding_protein | PP51695 | |||||
Corresponding_oligo_set | GPL14372_Probes_19472 | |||||
Microarray_results | GPL14372_Probes_19472 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S41-30.33 | Curator_confirmed | WBPerson4055 | |||
Method | curated |