WormBase Tree Display for CDS: PPA14777
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PPA14777 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (11) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S10-72.16 | ||
TREEFAM | TREEFAM_ID | TF105953 | ||||
DB_remark | PPA-TTB-1.2 protein; contains similarity to Pfam domains PF00382 (Transcription factor TFIIB repeat), PF08271 (TFIIB zinc-binding); contains similarity to Interpro domains IPR000812 (Transcription factor TFIIB), IPR013150 (Transcription factor TFIIB, cyclin-like domain), IPR013763 (Cyclin-like domain), IPR036915 (Cyclin-like superfamily), IPR013137 (Zinc finger, TFIIB-type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00104331 | ||||
Corresponding_transcript | PPA14777.1 | |||||
Corresponding_protein | PP61570 | |||||
Corresponding_oligo_set | GPL14372_Probes_19405 | |||||
GPL14372_Probes_58761 | ||||||
Matching_cDNA | DV018858 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_19405 | |||||
GPL14372_Probes_58761 | ||||||
RNASeq_FPKM | WBls:0000032 | 7.44675 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 13.1936 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S10-72.16 | Curator_confirmed | WBPerson4055 | |||
Method | curated |