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WormBase Tree Display for CDS: PPA14777

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Name Class

PPA14777SMapS_parentSequencePPA_ChrII
StructureSource_exons (11)
DB_infoDatabasepristionchus.orgcdsgene-UMA-S10-72.16
TREEFAMTREEFAM_IDTF105953
DB_remarkPPA-TTB-1.2 protein; contains similarity to Pfam domains PF00382 (Transcription factor TFIIB repeat), PF08271 (TFIIB zinc-binding); contains similarity to Interpro domains IPR000812 (Transcription factor TFIIB), IPR013150 (Transcription factor TFIIB, cyclin-like domain), IPR013763 (Cyclin-like domain), IPR036915 (Cyclin-like superfamily), IPR013137 (Zinc finger, TFIIB-type)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00104331
Corresponding_transcriptPPA14777.1
Corresponding_proteinPP61570
Corresponding_oligo_setGPL14372_Probes_19405
GPL14372_Probes_58761
Matching_cDNADV018858Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_19405
GPL14372_Probes_58761
RNASeq_FPKMWBls:00000327.44675From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010113.1936From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMA-S10-72.16Curator_confirmedWBPerson4055
Methodcurated