WormBase Tree Display for CDS: PPA14788
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PPA14788 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 60 | |||
190 | 285 | |||||
686 | 780 | |||||
1131 | 1196 | |||||
1552 | 1675 | |||||
3053 | 3125 | |||||
3710 | 3782 | |||||
4505 | 4613 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S41-26.6 | ||
DB_remark | PPA-RAB-39 protein; contains similarity to Pfam domain PF00071 (Ras family); contains similarity to Interpro domains IPR001806 (Small GTPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR005225 (Small GTP-binding protein domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00104342 | ||||
Corresponding_transcript | PPA14788.1 | |||||
Corresponding_protein | PP41051 | |||||
Corresponding_oligo_set | GPL14372_Probes_70486 | |||||
Matching_cDNA | AI987033 | Inferred_automatically | transcript_builder.pl | |||
AW052517 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_70486 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S41-26.6 | Curator_confirmed | WBPerson4055 | |||
Method | curated |