WormBase Tree Display for CDS: PPA14790
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| PPA14790 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (25) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S41-26.30 | ||
| DB_remark | contains similarity to Pfam domain PF02902 (Ulp1 protease family, C-terminal catalytic domain); contains similarity to Interpro domains IPR038765 (Papain-like cysteine peptidase superfamily), IPR003653 (Ulp1 protease family, C-terminal catalytic domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00104344 | ||||
| Corresponding_transcript | PPA14790.1 | |||||
| Corresponding_protein | PP55550 | |||||
| Corresponding_oligo_set | GPL14372_Probes_70472 | |||||
| GPL14372_Probes_70473 | ||||||
| GPL14372_Probes_70475 | ||||||
| GPL14372_Probes_70476 | ||||||
| GPL14372_Probes_70477 | ||||||
| Matching_cDNA | BM320485 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_70472 | |||||
| GPL14372_Probes_70473 | ||||||
| GPL14372_Probes_70475 | ||||||
| GPL14372_Probes_70476 | ||||||
| GPL14372_Probes_70477 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 3.50505 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S41-26.30 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
