WormBase Tree Display for CDS: PPA15240
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| PPA15240 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (12) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S41-7.56 | ||
| DB_remark | contains similarity to Pfam domains PF01096 (Transcription factor S-II (TFIIS)), PF07500 (Transcription factor S-II (TFIIS), central domain), PF08711 (TFIIS helical bundle-like domain); contains similarity to Interpro domains IPR001222 (Zinc finger, TFIIS-type), IPR003618 (Transcription elongation factor S-II, central domain), IPR036575 (Transcription elongation factor S-II, central domain superfamily), IPR035441 (TFIIS/LEDGF domain superfamily), IPR035100 (Transcription elongation factor, IIS-type), IPR017923 (Transcription factor IIS, N-terminal), IPR003617 (Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00104794 | ||||
| Corresponding_transcript | PPA15240.1 | |||||
| Corresponding_protein | PP72399 | |||||
| Corresponding_oligo_set | GPL14372_Probes_85743 | |||||
| GPL14372_Probes_85745 | ||||||
| Microarray_results | GPL14372_Probes_85743 | |||||
| GPL14372_Probes_85745 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S41-7.56 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
