WormBase Tree Display for CDS: PPA15513
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PPA15513 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 56 | |||
214 | 341 | |||||
565 | 633 | |||||
841 | 904 | |||||
1145 | 1235 | |||||
1363 | 1435 | |||||
1823 | 1911 | |||||
2072 | 2122 | |||||
2203 | 2314 | |||||
2439 | 2509 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S2840-24.14 | ||
DB_remark | contains similarity to Pfam domain PF00089 (Trypsin); contains similarity to Interpro domains IPR001314 (Peptidase S1A, chymotrypsin family), IPR043504 (Peptidase S1, PA clan, chymotrypsin-like fold), IPR001254 (Serine proteases, trypsin domain), IPR009003 (Peptidase S1, PA clan) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00105067 | ||||
Corresponding_transcript | PPA15513.1 | |||||
Corresponding_protein | PP60792 | |||||
Corresponding_oligo_set | GPL14372_Probes_58248 | |||||
GPL14372_Probes_58249 | ||||||
GPL14372_Probes_58250 | ||||||
Microarray_results | GPL14372_Probes_58248 | |||||
GPL14372_Probes_58249 | ||||||
GPL14372_Probes_58250 | ||||||
RNASeq_FPKM | WBls:0000032 | 16.1105 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMS-S2840-24.14 | Curator_confirmed | WBPerson4055 | |||
Method | curated |