WormBase Tree Display for CDS: PPA15516
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PPA15516 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons (18) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2840-24.26 | ||
DB_remark | contains similarity to Pfam domains PF02520 (SXP/RAL-2 family protein Ani s 5-like, metal-binding domain), PF10327 (Serpentine type 7TM GPCR chemoreceptor Sri); contains similarity to Interpro domains IPR019429 (7TM GPCR, serpentine chemoreceptor class i (Sri)), IPR003677 (SXP/RAL-2 family protein Ani s 5-like, cation-binding domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00105070 | ||||
Corresponding_transcript | PPA15516.1 | |||||
Corresponding_protein | PP69229 | |||||
Corresponding_oligo_set | GPL14372_Probes_20534 | |||||
GPL14372_Probes_77681 | ||||||
GPL14372_Probes_77682 | ||||||
GPL14372_Probes_77684 | ||||||
Microarray_results | GPL14372_Probes_20534 | |||||
GPL14372_Probes_77681 | ||||||
GPL14372_Probes_77682 | ||||||
GPL14372_Probes_77684 | ||||||
RNASeq_FPKM | WBls:0000032 | 4.41696 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2840-24.26 | Curator_confirmed | WBPerson4055 | |||
Method | curated |